Research

Y2H-SCORES

Y2H-SCORES is a software developed to rank protein-protein interactions from yeast two-hybrid next generation interaction screening (Y2H-NGIS) data. Besides the software, I developed a Y2H-NGIS simulator to generate Y2H-NGIS data, and a Benchmarking section that proves the performance of the software across published datasets.

I extended Y2H-SCORES to work with mass spectomertry Co-IP data, as you can see here

Interact-omics

I developed Interact-omics, a series of workflows to integrate interactome data with other omics like eQTL, RNASeq and Y2H-NGIS. Different network analyses are presented and applied to characterize the signaling of the Mla receptor.

TranscriptoNET

I am developing different data analysis workflows for transcriptome data. TranscriptoNET include generation and integration of Gene Ragulatory Networks (GRNs), prioritization of transcription factors for their role in regulating expression, data visualization and epistatic analysis of gene effects on gene expression.

Genetic resources

I have collaborated in different projects exploring the genomics and population structure of different groups of organisms. These had different applications going from genome evolution to the assessment of genetic diversity linked with agronomic or clinical traits.